280 research outputs found

    Intersubject Regularity in the Intrinsic Shape of Human V1

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    Previous studies have reported considerable intersubject variability in the three-dimensional geometry of the human primary visual cortex (V1). Here we demonstrate that much of this variability is due to extrinsic geometric features of the cortical folds, and that the intrinsic shape of V1 is similar across individuals. V1 was imaged in ten ex vivo human hemispheres using high-resolution (200 ÎĽm) structural magnetic resonance imaging at high field strength (7 T). Manual tracings of the stria of Gennari were used to construct a surface representation, which was computationally flattened into the plane with minimal metric distortion. The instrinsic shape of V1 was determined from the boundary of the planar representation of the stria. An ellipse provided a simple parametric shape model that was a good approximation to the boundary of flattened V1. The aspect ration of the best-fitting ellipse was found to be consistent across subject, with a mean of 1.85 and standard deviation of 0.12. Optimal rigid alignment of size-normalized V1 produced greater overlap than that achieved by previous studies using different registration methods. A shape analysis of published macaque data indicated that the intrinsic shape of macaque V1 is also stereotyped, and similar to the human V1 shape. Previoud measurements of the functional boundary of V1 in human and macaque are in close agreement with these results

    Accelerated parallel magnetic resonance imaging reconstruction using joint estimation with a sparse signal model

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    Accelerating magnetic resonance imaging (MRI) by reducing the number of acquired k-space scan lines benefits conventional MRI significantly by decreasing the time subjects remain in the magnet. In this paper, we formulate a novel method for Joint estimation from Undersampled LinEs in Parallel MRI (JULEP) that simultaneously calibrates the GeneRalized Autocalibrating Partially Parallel Acquisitions (GRAPPA) reconstruction kernel and reconstructs the full multi-channel k-space. We employ a joint sparsity signal model for the channel images in conjunction with observation models for both the acquired data and GRAPPA reconstructed k-space. We demonstrate using real MRI data that JULEP outperforms conventional GRAPPA reconstruction at high levels of undersampling, increasing the peak-signal-to-noise ratio by up to 10 dB.National Science Foundation (U.S.) (CAREER Grant 0643836)National Center for Research Resources (U.S.) (P41 RR014075)National Institutes of Health (U.S.) (NIH R01 EB007942)National Institutes of Health (U.S.) (NIH R01 EB006847)Siemens CorporationNational Science Foundation (U.S.). Graduate Research Fellowship Progra

    Sparsity-Promoting Calibration for GRAPPA Accelerated Parallel MRI Reconstruction

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    The amount of calibration data needed to produce images of adequate quality can prevent auto-calibrating parallel imaging reconstruction methods like generalized autocalibrating partially parallel acquisitions (GRAPPA) from achieving a high total acceleration factor. To improve the quality of calibration when the number of auto-calibration signal (ACS) lines is restricted, we propose a sparsity-promoting regularized calibration method that finds a GRAPPA kernel consistent with the ACS fit equations that yields jointly sparse reconstructed coil channel images. Several experiments evaluate the performance of the proposed method relative to unregularized and existing regularized calibration methods for both low-quality and underdetermined fits from the ACS lines. These experiments demonstrate that the proposed method, like other regularization methods, is capable of mitigating noise amplification, and in addition, the proposed method is particularly effective at minimizing coherent aliasing artifacts caused by poor kernel calibration in real data. Using the proposed method, we can increase the total achievable acceleration while reducing degradation of the reconstructed image better than existing regularized calibration methods.National Science Foundation (U.S.) (CAREER Grant 0643836)National Institutes of Health (U.S.) (Grant NIH R01 EB007942)National Institutes of Health (U.S.) (Grant NIH R01 EB006847)National Institutes of Health (U.S.) (Grant NIH P41 RR014075)National Institutes of Health (U.S.) (Grant NIH K01 EB011498)National Institutes of Health (U.S.) (Grant NIH F32 EB015914)National Science Foundation (U.S.). Graduate Research Fellowship Progra

    HSV suppression reduces seminal HIV-1 levels in HIV-1/HSV-2 co-infected men who have sex with men.

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    OBJECTIVES: Suppressive herpes simplex virus (HSV) therapy can decrease plasma, cervical, and rectal HIV-1 levels in HIV-1/HSV-2 co-infected persons. We evaluated the effect of HSV-2 suppression on seminal HIV-1 levels. DESIGN: Twenty antiretroviral therapy (ART)-naive HIV-1/HSV-2 men who have sex with men (MSM) in Lima, Peru, with CD4 >200 cells/microl randomly received valacyclovir 500 mg twice daily or placebo for 8 weeks, then the alternative regimen for 8 weeks after a 2-week washout. Peripheral blood and semen specimens were collected weekly. Anogenital swab specimens for HSV DNA were self-collected daily and during clinic visits. METHODS: HIV-1 RNA was quantified in seminal and blood plasma by TaqMan real-time polymerase chain reaction (RT-PCR) or Roche Amplicor Monitor assays. HSV and seminal cytomegalovirus (CMV) were quantified by RT-PCR. Linear mixed models examined differences within participants by treatment arm. RESULTS: Median CD4 cell count of participants was 424 cells/microl. HIV-1 was detected in 71% of 231 semen specimens. HSV was detected from 29 and 4.4% of swabs on placebo and valacyclovir, respectively (P < 0.001). Valacyclovir significantly reduced the proportion of days with detectable seminal HIV-1 (63% during valacyclovir vs. 78% during placebo; P = 0.04). Seminal HIV-1 quantity was 0.25 log10 copies/ml lower [95% confidence interval (CI) -0.40 to -0.10; P = 0.001] during the valacyclovir arm compared with placebo, a 44% reduction. CD4 cell count (P = 0.32) and seminal cellular CMV quantity (P = 0.68) did not predict seminal plasma HIV-1 level. CONCLUSIONS: Suppressive valacyclovir reduced seminal HIV-1 levels in HIV-1/HSV-2 co-infected MSM not receiving ART. The significance of this finding will be evaluated in a trial with HIV-1 transmission as the outcome

    Black Hole Evaporation along Macroscopic Strings

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    We develop the quantization of a macroscopic string which extends radially from a Schwarzschild black hole. The Hawking process excites a thermal bath of string modes that causes the black hole to lose mass. The resulting typical string configuration is a random walk in the angular coordinates. We show that the energy flux in string excitations is approximately that of spacetime field modes.Comment: 26pp, EFI 93-73. (Original claim that string Hawking flux exceeds spacetime flux is WRONG. It is the same; revised version provides correct argument and additional comments.

    Variability and anatomical specificity of the orbitofrontothalamic fibers of passage in the ventral capsule/ventral striatum (VC/VS): precision care for patient-specific tractography-guided targeting of deep brain stimulation (DBS) in obsessive compulsive disorder (OCD)

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    Deep Brain Stimulation (DBS) is a neurosurgical procedure that can reduce symptoms in medically intractable obsessive-compulsive disorder (OCD). Conceptually, DBS of the ventral capsule/ventral striatum (VC/VS) region targets reciprocal excitatory connections between the orbitofrontal cortex (OFC) and thalamus, decreasing abnormal reverberant activity within the OFC-caudate-pallidal-thalamic circuit. In this study, we investigated these connections using diffusion magnetic resonance imaging (dMRI) on human connectome datasets of twenty-nine healthy young-adult volunteers with two-tensor unscented Kalman filter based tractography. We studied the morphology of the lateral and medial orbitofrontothalamic connections and estimated their topographic variability within the VC/VS region. Our results showed that the morphology of the individual orbitofrontothalamic fibers of passage in the VC/VS region is complex and inter-individual variability in their topography is high. We applied this method to an example OCD patient case who underwent DBS surgery, formulating an initial proof of concept for a tractography-guided patient-specific approach in DBS for medically intractable OCD. This may improve on current surgical practice, which involves implanting all patients at identical stereotactic coordinates within the VC/VS region
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